Installation
Get analysis rolling on your own computer by following these instructions to create a dedicated Anaconda environment. During this process you’ll install Anaconda and Git as well as clone repositories for data processing and plotting.
Install Anaconda and Git:
Download miniconda 3 from https://repo.continuum.io/miniconda/
Pick
Miniconda3-latest-YourOS-x86-64
Download git from https://git-scm.com/downloads
Be sure to enable
git from the command line
during installWe also recommend
check out as-is, commit as-is
for Windows users
Set up conda environment with aisynphys code:
From Anaconda prompt, download aisynphys repository:
> git clone https://github.com/alleninstitute/aisynphys > cd aisynphys
Create environment:
> conda env create --name aisynphys --file desktop-environment.yml > conda activate aisynphys
Install aisynphys:
> python setup.py develop > cd ..
Check out the interactive tools you can use!