Installation

Get analysis rolling on your own computer by following these instructions to create a dedicated Anaconda environment. During this process you’ll install Anaconda and Git as well as clone repositories for data processing and plotting.

  1. Install Anaconda and Git:

  2. Set up conda environment with aisynphys code:

    • From Anaconda prompt, download aisynphys repository:

      > git clone https://github.com/alleninstitute/aisynphys
      > cd aisynphys
      
    • Create environment:

      > conda env create --name aisynphys --file desktop-environment.yml
      > conda activate aisynphys
      
    • Install aisynphys:

      > python setup.py develop
      > cd ..
      
  3. Check out the interactive tools you can use!